SRX15206522
GSM6122921: CG2678deltaZF4 Rhi-ChIP; Drosophila melanogaster; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
rhi

Cell type

Cell type Class
Adult
Cell type
Ovary
NA
NA

Attributes by original data submitter

Sample

source_name
ovary
tissue
ovary
genotype
w;; CG2678RMCE[deltaZnF#4-S161-3xFLAG]/TM3,Sb;
antibody
anti-Rhi antibody (Rhino#1_3573gly)

Sequenced DNA Library

library_name
GSM6122921
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin immunoprecipitation (ChIP) was carried out according to Lee et al. (2006) ChIP-seq libraries were prepared using the NEB Next Ultra II DNA Library for Illumina (NEB).

Sequencing Platform

instrument_model
NextSeq 550

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
14805375
Reads aligned (%)
96.9
Duplicates removed (%)
39.4
Number of peaks
3417 (qval < 1E-05)

dm3

Number of total reads
14805375
Reads aligned (%)
97.0
Duplicates removed (%)
37.1
Number of peaks
4206 (qval < 1E-05)

Base call quality data from DBCLS SRA